Differential expression analysis

Instruction

Step 1: Choose analysis method (t-test or DESeq2).

Step 2: Click the Clear button to remove the default samples and choose your samples for Group1 and Group2. Group2 should be the control group.

Step 3: Click the Submit button to perform differential expression analysis.

Notes

1.You may select at most 8 samples for each group.

2.It may take a few minutes to calculate when choosing DESeq2 method. Please wait patiently and do not repeat submission.

3.The boxplot will be updated to display the gene/microRNA expression in the user-defined groups after clicking the submit button.

Bulk RNA-seq

Clear Submit
Group1(Test)
Group2(Control)
Group1 vs Group2 Volcano plot
SVG PDF Download DEGs
Group1 and Group2 Box Plot
SVG PDF

Micro RNA-seq

Clear Submit
Group1(Test)
Group2(Control)
Group1 vs Group2 Volcano plot
SVG PDF Download DEGs
Group1 and Group2 Box plot
SVG PDF

Download count data

Bulk RNA-seq

#
File Name
CSV Format
1 Count data adjusted for batch effect Download
2 RPKM data adjusted for batch effect Download
3 Raw count data Download
4 Raw RPKM data Download

Micro RNA-seq

#
File Name
CSV Format
1 Count data adjusted for batch effect Download
2 RPM data adjusted for batch effect Download
3 Raw count data Download
4 Raw RPM data Download
Mailing address
A314, ZJU-UoE Institute,
718 East Haizhou Rd.,
Haining, Zhejiang 314400,
P.R. China


LabW © Copyright 2022